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TheFlow a3c8ca462c SECURITY: Remove all internal/confidential files from public repository 
CRITICAL SECURITY FIX:
Removed 226 internal and sensitive files from git tracking to protect
the public tractatus-framework repository from exposing confidential
development information, server details, and internal strategies.

SCOPE:
This cleanup separates the INTERNAL repository (tractatus) from the
PUBLIC repository (tractatus-framework on GitHub).

REMOVED DIRECTORIES (entire):
- .claude/ (framework session state, metrics, archives)
- governance/ (internal operational governance)
- For Claude Web/ (internal development specs)
- scripts/hook-validators/ (internal enforcement)
- scripts/framework-components/ (internal components)
- docs/planning/, docs/testing/, docs/outreach/
- docs/stripe-analysis/, docs/economist-analysis/
- docs/framework-incidents/, docs/deployment-logs/
- docs/analysis-archive-2025-10/

REMOVED ROOT FILES:
- CLAUDE_*.md, ClaudeWeb*.md (internal development)
- PITCH-*.md (internal pitch documents)
- PHASE-*.md, MEETING_NOTES*.md (internal planning)
- SESSION*.md, OPTIMAL_NEXT_SESSION*.md (session handoffs)
- ARCHIVE_SUMMARY*.md, CLOSEDOWN*.* (session archives)
- EXECUTIVE_BRIEF*.md (internal briefs)
- Tractatus-Website-Complete-Specification*.md (internal specs)
- UI_TRANSFORMATION_PROJECT_PLAN.md, SITE_IMPROVEMENT_PRIORITIES.md
- SCHEDULED_TASKS.md, TRACTATUS_BRAND_SYSTEM.md
- .stripe-ids.json, .rsyncignore (sensitive/deployment)
- deployment-output.txt, migration-output.txt (logs)
- ECONOMIST_LETTER*.docx, PERPLEXITY_USER_PROMPT.txt (correspondence)

REMOVED SCRIPTS:
- scripts/deploy-*.sh (contain server IPs)
- scripts/session-init.js, scripts/check-session-pressure.js
- scripts/analyze-violations.js
- scripts/hook-validators/*.js (5 files)
- scripts/framework-components/*.js

REMOVED DOCS (96 files):
- docs/SESSION*.md, docs/session-handoff-*.md
- docs/DEPLOYMENT*.md, docs/MULTI_PROJECT*.md
- docs/DOCUMENT_AUDIT*.md, docs/DOCUMENT_*.md
- docs/BLOG-POST-OUTLINES.md
- docs/PHASE-*.md, docs/STRIPE_*.md, docs/KOHA*.md
- docs/SECURITY_AUDIT*.md, docs/FRAMEWORK_FAILURE*.md
- docs/BENCHMARK*.md, docs/IMPLEMENTATION_PROGRESS*.md
- docs/BOOTSTRAPPING*.md, docs/GOVERNANCE-RULE-LIBRARY.md
- docs/SIMULATION*.md, docs/API_MEMORY*.md

ADDED PROTECTIONS:
1. Comprehensive .gitignore (172 lines)
   - Blocks all internal directories
   - Blocks all internal file patterns
   - Prevents accidental commits

2. PUBLIC_REPO_CHECKLIST.md
   - Security verification checklist
   - Weekly maintenance procedures
   - Clear guidelines for public vs internal

REMAINING PUBLIC FILES: 6,435
- src/: 85 (open source services)
- tests/: 35 (unit/integration tests)
- public/: 178 (website frontend)
- scripts/: 111 (public utilities)
- docs/: 107 (public documentation)
- root: 13 (README, LICENSE, package.json, configs)

VERIFICATION:
✓ No server IPs
✓ No SSH keys or credentials
✓ No payment system secrets
✓ No internal planning documents
✓ No session handoffs or development logs
✓ No deployment scripts with production details

RESULT:
Public tractatus-framework repository now contains ONLY:
- Open source code
- Public documentation
- Implementation guides
- Apache 2.0 licensed content

Internal tractatus repository (local) retains ALL files for development.

🤖 Generated with Claude Code
Co-Authored-By: Claude <noreply@anthropic.com>
2025-10-21 18:50:16 +13:00
..
migrations feat: implement Rule Manager and Project Manager admin systems 2025-10-11 17:16:51 +13:00
monitoring fix: resolve grep count handling in log monitor 2025-10-10 05:30:36 +13:00
add-api-docs.js feat: newsletter modal and deployment script enhancements 2025-10-14 13:11:46 +13:00
add-architectural-overview-doc.js feat: add script to deploy architectural overview document 2025-10-11 00:44:22 +13:00
add-event-delegation.js feat(csp): add event delegation for all admin interactions 2025-10-19 13:36:53 +13:00
add-governance-rules.js feat: implement Priority 1 - Public Blog System with governance enhancements 2025-10-11 14:47:01 +13:00
add-progress-bar-helpers.js fix(csp): achieve 100% CSP compliance - zero violations 2025-10-19 13:32:24 +13:00
add-sections-from-db-markdown.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
add-sections-to-17-docs.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
add-sections-to-documents.js feat: fix documentation system - cards, PDFs, TOC, and navigation 2025-10-07 22:51:55 +13:00
analyze-instruction-violations.js feat(framework): implement 6 high-priority governance enhancements 2025-10-20 20:41:10 +13:00
archive-all-internal-documents.js feat: implement documentation reorganization with archives 2025-10-11 01:26:14 +13:00
archive-outdated-documents.js feat: implement documentation reorganization with archives 2025-10-11 01:26:14 +13:00
audit-accessibility.js feat: comprehensive accessibility improvements (WCAG 2.1 AA) 2025-10-12 07:08:40 +13:00
check-card-view-status.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
check-color-contrast.js feat: complete Phase 2 - accessibility, performance, mobile polish 2025-10-08 13:29:26 +13:00
check-csp-violations.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
check-missing-pdfs.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
check-sections.js docs: fix Introduction language violations and add database utility scripts 2025-10-12 22:41:04 +13:00
check-stripe-bank-account.js feat(stripe): add diagnostic tools for Customer Portal 2025-10-18 22:19:30 +13:00
clean-test-db.js fix: add Jest test infrastructure and reduce test failures from 29 to 13 2025-10-09 20:37:45 +13:00
cleanup-database.js feat: newsletter modal and deployment script enhancements 2025-10-14 13:11:46 +13:00
compare-databases.js docs: fix Introduction language violations and add database utility scripts 2025-10-12 22:41:04 +13:00
create-admin-noninteractive.js feat: comprehensive accessibility improvements (WCAG 2.1 AA) 2025-10-12 07:08:40 +13:00
fix-admin-csp-violations.js fix(csp): achieve 100% CSP compliance - zero violations 2025-10-19 13:32:24 +13:00
fix-admin-event-handlers.js fix(csp): achieve 100% CSP compliance - zero violations 2025-10-19 13:32:24 +13:00
fix-admin-user.js fix(auth): resolve admin login - token sanitization and missing password field 2025-10-20 21:13:42 +13:00
fix-category-mismatches.js docs: fix Introduction language violations and add database utility scripts 2025-10-12 22:41:04 +13:00
fix-csp-html-violations.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
fix-csp-major-html.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
fix-csp-violations.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
fix-remaining-index-gradients.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
framework-watchdog.js feat(infra): semantic versioning and systemd service implementation 2025-10-09 09:16:22 +13:00
generate-architectural-safeguards-pdf.py fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
generate-card-sections.js feat: newsletter modal and deployment script enhancements 2025-10-14 13:11:46 +13:00
generate-markdown-pdfs.js feat(scripts): add value pluralism support scripts 2025-10-12 16:36:03 +13:00
generate-missing-pdfs.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
generate-pdf-commissioners.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
generate-pdf-custom-footer.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
generate-pdfs.js feat: fix documentation system - cards, PDFs, TOC, and navigation 2025-10-07 22:51:55 +13:00
generate-presentation.py fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
generate-research-pdfs.js feat: comprehensive accessibility improvements (WCAG 2.1 AA) 2025-10-12 07:08:40 +13:00
generate-single-pdf.js feat(infra): semantic versioning and systemd service implementation 2025-10-09 09:16:22 +13:00
generate-test-token.js feat: implement Rule Manager and Project Manager admin systems 2025-10-11 17:16:51 +13:00
import-5-archives.js refactor(data): migrate legacy public field to modern visibility field 2025-10-19 13:49:21 +13:00
import-coding-rules.js feat: implement Rule Manager and Project Manager admin systems 2025-10-11 17:16:51 +13:00
import-technical-docs.js feat(infra): semantic versioning and systemd service implementation 2025-10-09 09:16:22 +13:00
init-db.js feat: add MongoDB systemd service and database initialization 2025-10-06 23:28:42 +13:00
init-koha.js feat: implement Koha donation system frontend (Phase 3) 2025-10-08 13:56:56 +13:00
install-mongodb-service.sh feat: add MongoDB systemd service and database initialization 2025-10-06 23:28:42 +13:00
install-systemd.sh feat(infra): semantic versioning and systemd service implementation 2025-10-09 09:16:22 +13:00
list-junk-docs.js feat: newsletter modal and deployment script enhancements 2025-10-14 13:11:46 +13:00
load-governance-rules.js feat: deployment quickstart kit - 30-minute Docker deployment (Task 6) 2025-10-12 07:27:37 +13:00
load-inst-035.js fix: add dotenv loading to migration scripts + create inst_036 anti-quick-fix rule 2025-10-12 16:47:22 +13:00
migrate-appendix-documents.js feat(infra): semantic versioning and systemd service implementation 2025-10-09 09:16:22 +13:00
migrate-doc-categories.js fix: move value pluralism FAQ to advanced-topics and collapse technical-reference 2025-10-12 21:39:32 +13:00
migrate-document-categorization.js feat: reorganize document categories with intuitive structure 2025-10-12 20:24:47 +13:00
migrate-documents.js fix(migration): correct schema mismatch between migration script and Document model 2025-10-20 17:18:31 +13:00
migrate-public-to-visibility.js refactor(data): migrate legacy public field to modern visibility field 2025-10-19 13:49:21 +13:00
migrate-to-memory-proxy.js feat: Phase 5 PoC Week 3 - MemoryProxy integration with Tractatus services 2025-10-10 12:22:06 +13:00
migrate-to-mongodb.js feat: enhance framework services and format architectural documentation 2025-10-11 00:50:47 +13:00
migrate-value-pluralism-docs.js fix: use correct env var names (MONGODB_URI not MONGO_URI) 2025-10-12 20:01:28 +13:00
minify-theme-css.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
mobile-audit.js feat: complete Phase 2 - accessibility, performance, mobile polish 2025-10-08 13:29:26 +13:00
mongodb-tractatus.service feat: add MongoDB systemd service and database initialization 2025-10-06 23:28:42 +13:00
parse-and-update-safeguards-document.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
performance-audit.js feat: complete Phase 2 - accessibility, performance, mobile polish 2025-10-08 13:29:26 +13:00
plan-reminder.js feat: comprehensive accessibility improvements (WCAG 2.1 AA) 2025-10-12 07:08:40 +13:00
pre-action-check.js chore(framework): update instruction history and hook metrics 2025-10-19 12:48:21 +13:00
query-all-documents.js refactor(data): migrate legacy public field to modern visibility field 2025-10-19 13:49:21 +13:00
query-archives-direct.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
recategorize-safeguards-sections.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
recover-framework.js feat(infra): semantic versioning and systemd service implementation 2025-10-09 09:16:22 +13:00
remove-duplicate-documents.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
reorganize-docs-sidebar.js feat: redesign docs sidebar with audience-based categories + fix PNG background 2025-10-12 09:10:58 +13:00
security-audit.js feat(infra): semantic versioning and systemd service implementation 2025-10-09 09:16:22 +13:00
seed-admin.js feat: add API routes, controllers, and migration tools 2025-10-07 00:36:40 +13:00
seed-architectural-safeguards-document.js refactor(data): migrate legacy public field to modern visibility field 2025-10-19 13:49:21 +13:00
seed-first-blog-post.js fix(values): remove prohibited 'guarantee' language from user-facing content 2025-10-21 15:19:25 +13:00
seed-projects.js feat: implement Rule Manager and Project Manager admin systems 2025-10-11 17:16:51 +13:00
seed-scaling-blog-post.js feat(content): enhance About page and publish scaling roadmap blog article 2025-10-20 20:29:58 +13:00
setup-stripe-products.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
stripe-webhook-setup.sh fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
sync-instructions-to-db.js fix(mongodb): resolve production connection drops and add governance sync system 2025-10-21 11:39:05 +13:00
sync-to-public.sh feat: newsletter modal and deployment script enhancements 2025-10-14 13:11:46 +13:00
test-deliberation-session.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
test-production-deployment.js docs: Phase 5 integration roadmap and production deployment test 2025-10-10 12:33:57 +13:00
test-session1-integration.js feat: Session 1 - Core services integration (InstructionPersistenceClassifier + CrossReferenceValidator) 2025-10-10 12:39:58 +13:00
test-session2-integration.js feat: Session 2 - Complete framework integration (6/6 services) 2025-10-10 12:49:37 +13:00
test-stripe-connection.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
test-stripe-integration.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
track-action-patterns.js feat(framework): implement 6 high-priority governance enhancements 2025-10-20 20:41:10 +13:00
track-user-suggestions.js feat(framework): implement 6 high-priority governance enhancements 2025-10-20 20:41:10 +13:00
update-cache-version.js docs: update framework to 6 services with PluralisticDeliberationOrchestrator 2025-10-12 19:55:44 +13:00
update-core-concepts.js feat: Phase 2 - Update documentation for Phase 5 MongoDB architecture 2025-10-11 01:35:24 +13:00
update-document-metadata.js feat: implement documentation reorganization with archives 2025-10-11 01:26:14 +13:00
update-document-ordering.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
update-glossary.js feat: Phase 2 - Update documentation for Phase 5 MongoDB architecture 2025-10-11 01:35:24 +13:00
upload-document.js refactor(data): migrate legacy public field to modern visibility field 2025-10-19 13:49:21 +13:00
validate-deployment.js feat(framework): implement 6 high-priority governance enhancements 2025-10-20 20:41:10 +13:00
validate-document-security.js feat(infra): semantic versioning and systemd service implementation 2025-10-09 09:16:22 +13:00
validate-public-sync.js fix: update validation script to allow legitimate public info 2025-10-09 15:23:40 +13:00
verify-34-documents.js refactor(data): migrate legacy public field to modern visibility field 2025-10-19 13:49:21 +13:00
verify-all-34.js fix(csp): clean all public-facing pages - 75 violations fixed (66%) 2025-10-19 13:17:50 +13:00
verify-stripe-portal.js feat(stripe): add diagnostic tools for Customer Portal 2025-10-18 22:19:30 +13:00